BioNLP'09 Shared Task on
Event Extraction
in conjunction with BioNLP, a NAACL-HLT 2009 workshop, June 4-5 2009, Boulder, Colorado
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Final Evaluation Results
on Phosphorylation events by Approx. Span matching

Task 1

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   TEAM                                 gold (match)   answer (match)   recall    prec.   fscore
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[JULIELab ]       Phosphorylation        135 (  103)      113 (  103)    76.30    91.15    83.06
[ConcordU ]       Phosphorylation        135 (   94)       98 (   94)    69.63    95.92    80.69
[UT+DBCLS ]       Phosphorylation        135 (  106)      137 (  106)    78.52    77.37    77.94
[ UTurku  ]       Phosphorylation        135 (  109)      146 (  109)    80.74    74.66    77.58
[ UZurich ]       Phosphorylation        135 (   81)       84 (   81)    60.00    96.43    73.97
[VIBGhent ]       Phosphorylation        135 (   76)       85 (   76)    56.30    89.41    69.09
[  UNSW   ]       Phosphorylation        135 (   85)      119 (   85)    62.96    71.43    66.93
[  UMich  ]       Phosphorylation        135 (  100)      166 (  100)    74.07    60.24    66.45
[ASU+HU+BU]       Phosphorylation        135 (   74)       88 (   74)    54.81    84.09    66.37
[  SCAI   ]       Phosphorylation        135 (   69)       80 (   69)    51.11    86.25    64.19
[ UNIMAN  ]       Phosphorylation        135 (  106)      197 (  106)    78.52    53.81    63.86
[CNBMadrid]       Phosphorylation        135 (   81)      123 (   81)    60.00    65.85    62.79
[ UAveiro ]       Phosphorylation        135 (   67)       84 (   67)    49.63    79.76    61.19
[   Cam   ]       Phosphorylation        135 (   67)       86 (   67)    49.63    77.91    60.63
[CIPS-ASU ]       Phosphorylation        135 (   72)      107 (   72)    53.33    67.29    59.50
[ UTokyo  ]       Phosphorylation        135 (   60)       72 (   60)    44.44    83.33    57.97
[ USzeged ]       Phosphorylation        135 (  109)      274 (  109)    80.74    39.78    53.30
[  NICTA  ]       Phosphorylation        135 (   61)       95 (   61)    45.19    64.21    53.04
[ Team 24 ]       Phosphorylation        135 (   60)       95 (   60)    44.44    63.16    52.17
[  PIKB   ]       Phosphorylation        135 (   48)       53 (   48)    35.56    90.57    51.06
[ KoreaU  ]       Phosphorylation        135 (   44)       59 (   44)    32.59    74.58    45.36
[UAntwerp ]       Phosphorylation        135 (   38)       56 (   38)    28.15    67.86    39.79
[CCP-BTMG ]       Phosphorylation        135 (   30)       30 (   30)    22.22   100.00    36.36
[ Team 09 ]       Phosphorylation        135 (   15)       20 (   15)    11.11    75.00    19.35

Task 2

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   TEAM                                 gold (match)   answer (match)   recall    prec.   fscore
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[UT+DBCLS ]       Phosphorylation        139 (   96)      137 (   96)    69.06    70.07    69.57
[CNBMadrid]       Phosphorylation        139 (   69)      123 (   69)    49.64    56.10    52.67
[ Team 24 ]       Phosphorylation        139 (   55)      119 (   55)    39.57    46.22    42.64
[CCP-BTMG ]       Phosphorylation        139 (   28)       30 (   28)    20.14    93.33    33.14
[ASU+HU+BU]       Phosphorylation        139 (   31)       88 (   31)    22.30    35.23    27.31
[UAntwerp ]       Phosphorylation        139 (   22)       56 (   22)    15.83    39.29    22.56

Task 3

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   TEAM                                 gold (match)   answer (match)   recall    prec.   fscore
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